PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_1DC1EF368.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 794aa    MW: 89606.6 Da    PI: 8.7188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_1DC1EF368.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.6e-1734117190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C a+++vk++ d+  +v+  +l+HnH+
  Traes_6AL_1DC1EF368.2  34 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 115
                            5*****************9999.6677****************9988.....99*********************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_6AL_1DC1EF368.2 116 VS 117
                            87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1534118IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28238331IPR018289MULE transposase domain
PROSITE profilePS509669.31524560IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5528556IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6535562IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MMVNPDPYLE ESDGQDIGIP EVGMVFNNHM EVNRFYRRYA RRVGFGVSVR RSSFSQEGTC  60
LYLELMCCKG GRPRYEPKFR KRASSTTNCP ARIRVKLWGD KLLHVELANL DHNHPVSPAM  120
ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG ALEELLFGES KNHSFVERGR  180
LKLQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGCVRNV FWADAWSRAM YEYYNDAITL  240
DTSYVVSKHD MPLVTFLGVN HHGQSVLLGC GLLSDETAET YTWLFKAWVA CMSGNLPKAI  300
ITDQCRGIQS AVAEVVPGVR HRICLHQIMK KAAEQLSGLS EYKAISKALQ KASYDSLTVD  360
EFEGEWSTLI TYNGLQGHDW LRSLYECRFS WVPIFLKDAF WAGMSATQRS ETITPFFEGY  420
VDLKTSLKQF LGKYEMILQS KYEKEAQADF ETFHKQRPPV SKFYMEEQLS KVYTHNMFKK  480
LQDEIEAIMY CHVSLMNGDG PISTFNVKEC IFLEDGKRTM SKIFAVTYNT EEKDITCICG  540
GFQFSGILCR HSLSVLKFQQ VREVPSQYVL DRWKKDFRQL HVMGRLSSDV VPDNRVDRYD  600
YLSMRCLQLV DSAVLSDKYR LALRLVREVE KFLLNSNTHD DTQPRIKSRI PKVKPNTVTG  660
QNLVNVVTDN GNGGPKGPEA SASAQASQIQ KGVAEKAVVP AGYIGVPANV QQFMGNQAAM  720
RPSIVYMVPS GVDPQAFGNG VLMPVMYQQM FQIPQQPNGA AQDTLANGKR KRPRAQKPTE  780
TSHQSNGTSG PAAG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575325.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5G5M50.0W5G5M5_WHEAT; Uncharacterized protein
STRINGMLOC_3334.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-134FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]